Ligand Viewer is a 2D visualiser that allows you to EFFICIENTLY, QUICKLY and EASILY analyse the interactions and placement of docked molecules within a protein.
Use and view a large variety of details such as all close side chains, all close hydrogen bonds, a customisable xyz plane, and side chain highlighting to make it easy to visualise how each molecule is docked inside the protein.
+ Use the popular 3D molecular file formats sdf, sd, and pdb: *Use sdf or sd files (MDL MOL format) for the ligand and pdb for the protein*
To convert between molecular file formats we recommend to use the free open source software openbabel available at http://openbabel.org/wiki/Category:Installation
The app only allows sd and sdf formats as in these formats you can store molecular properties for the ligand which can be displayed within the app.
+ For each molecule, you can also view its properties that are listed in the sd/sdf file and compare them very easily with other molecules!
